Identification and Characterization of Novel Genetic Markers Associated with Biological Control Activities in Bacillus subtilis

ABSTRACT Suppressive subtractive hybridization (SSH) was used to identify genetic markers associated with biological control of plant pathogens by Bacillus subtilis. The genomes of two commercialized strains, GB03 and QST713, were compared with that of strain 168, which has no defined biocontrol capacities, to obtain a pool of DNA fragments unique to the two biocontrol strains. The sequences of 149 subtracted fragments were determined and compared with those present in GenBank, but only 80 were found to correspond to known Bacillus genes. Of these, 65 were similar to genes with a wide range of metabolic functions, including the biosynthesis of cell wall components, sporulation, and antibiotic biosynthesis. Sixteen subtracted fragments shared a high degree of similarity to sequences found in multiple B. subtilis strains with proven biocontrol capacities. Oligonucleotide primers specific to nine of these genes were developed. The targeted genes included five genes involved in antibiotic synthesis (bmyB, fenD, ituC,srfAA, and srfAB) and four additional genes (yndJ, yngG, bioA, and a hypothetical open reading frame) not previously associated with biological control. All nine markers were amplified from the commercialized B. subtilis strains GB03, QST713, and MBI600, with the exception of ituC, which was not detected in GB03. The markers also were amplified from four other B. subtilis isolates, but they were not amplified from other related Bacillus strains, including the plant growth-promoting rhizobacteria IN937a and IN937b. Sequencing of the amplified markers revealed that all seven of the isolates that scored positive for multiple markers were genotypically distinct strains. Interestingly, strains scored positive for the amplifiable markers generally were more effective at inhibiting the growth of Rhizoctonia solani and Pythium ultimum than other Bacillus isolates that lacked the markers. The potential utility of the defined genetic markers to further define the diversity, ecology, and biocontrol activities of B. subtilis are discussed.     

Determination of Chemical Composition and Nutritive Value with Fatty Acid Compositions of African Mangosteen (<Emphasis Type="Italic">Garcinia Livingstonei</Emphasis>)

African mangosteen (Garcinia livingstonei T. Anderson) is native to Africa and is exotic to other parts of the world. It is a fruit bearing tree with multiple uses. This study was purposed to determine, by analysis, the chemical compositions and nutritive value of the fruits of African mangosteen. Proximate compositions varied with the portions such as epicarp, mesocarp, endocarp and seed tested. All fruit portions contained carbohydrate (37.67–95.02%) and crude protein (0.65–31.76%) as their major components. Moisture (0.45–3.42%), crude fat (1.23–19.55%), crude fiber (2.93–21.13%) and ash (1.76–5.44%) were also found at different levels, depending upon the portions. All portions of fruit were rich in macro and micro elements. The fruits also possessed phenolics (174.02–10.725?mg GAE per g), flavonoid (19.25 to 99.98?µg QE per g) and alkaloid (1.56 to 9.49?mg/kg) contents. The constitution of tannins and oxalate which contribute towards the anti-nutritive value was also low, thus making the fruits beneficial for consumption. Quality attributes like relative amount of oleic acid, total unsaturated fatty acid, acid value, free fatty acid, peroxide value and iodine value showed that the seed oil of African mangosteen can become one among the oleic acid based vegetable oils for consumption.     

水稻外来入侵软体动物的治理

本文阐述了福寿螺[Pomacea canaliculata (Lamarck)]的原产地概况、生活习性、传播特性、入侵及其危害特点。并特别指出,由福寿螺入侵所引起的经济、健康和环境的问题是一个不可逆转的过程,不但治理所需的费用巨大,而且多数措施对环境有害。为此,本文提出了福寿螺综合治理的方法和治理新策略,强调治理与利用并举,利用其作为动物和人类的营养食品,也可利用它来防治杂草。     

Adipose triglyceride lipase contributes to cancer-associated cachexia

Cachexia is a multifactorial wasting syndrome most common in patients with cancer that is characterized by the uncontrolled loss of adipose and muscle mass. We show that the inhibition of lipolysis through genetic ablation of adipose triglyceride lipase (Atgl) or hormone-sensitive lipase (Hsl) ameliorates certain features of cancer-associated cachexia (CAC). In wild-type C57BL/6 mice, the injection of Lewis lung carcinoma or B16 melanoma cells causes tumor growth, loss of white adipose tissue (WAT), and a marked reduction of gastrocnemius muscle. In contrast, Atgl-deficient mice with tumors resisted increased WAT lipolysis, myocyte apoptosis, and proteasomal muscle degradation and maintained normal adipose and gastrocnemius muscle mass. Hsl-deficient mice with tumors were also protected although to a lesser degree. Thus, functional lipolysis is essential in the pathogenesis of CAC. Pharmacological inhibition of metabolic lipases may help prevent cachexia.     

Impact of Subsurface Drainage on Improvement of Crop Production and Farm Income in North-West India

The Indian Council of Agricultural research has given priority to control and manage salinity problems that have developed in north-west India. Multi-disciplinary taskforces have recommended installation of subsurface drainage for salinity control, based on design and management techniques developed by the Central Soil Salinity Research Institute (CSSRI), to rehabilitate lands with excess soil salinity. After small-scale studies, large-scale pilot projects were launched to install subsurface drainage in problem areas. One such attempt in was initiated in the north-west region of India where a large-scale drainage project was carried out with Dutch collaboration. We assessed the impact of investments in subsurface drainage in order to validate past funding on research of drainage in India. The important methods used for assessing the efficiency benefits of drainage investment were: to determine the impact of subsurface drainage in terms of net present value, internal rate of returns, consumers' surplus and producers' surplus; to assess the social welfare in terms of social equality and sustainability of the drainage system; and to examine the factors affecting the sustainability of the technology. The internal rate of return was computed to assess the efficiency parameter of subsurface drainage for salinity management. In order to measure the changes in inequality distribution of income, Gini concentration ratios were computed with and without installing sub surface drainage. The Radar Approach, a method based on a graphical display of differences between actual ideal performance, was used to quantify drainage sustainability in terms of optimizing gains and conserving, or improving the quality of soil and water resources. There were several farm-level benefits as a result of installing subsurface drainage: these included: (i) a substantial increase in farm income; (ii) cropping intensification and diversification toward high value crops; and (iii) generation employment. A high internal rate of return justified investment in subsurface drainage. Income inequalities across farms were reduced. The radar approach showed improvement in sustainability in terms of economic gains and resource conservation. Despite of these economic, social, and environmental benefits, the sustainability of subsurface drainage technology is questionable. The specific reasons include: (i) the nature of the technology; (ii) lukewarm collective action by the beneficiaries; (iii) conflicting objectives among beneficiaries; and (iv) growing numbers of free riders. To a large extent these were addressed in the study area by forming village committees. Without appropriate institutional arrangements, subsurface drainage may not yield the desired results, and in the long run may result in neglect of operation and maintenance needs and ultimately the abandonment of the technology.     

Seasonal pattern of total soil respiration in undisturbed and disturbed ecosystems of Central Himalaya

Summary The rates of CO₂ efflux were measured by an alkali absorption method (using 20 ml 0.5 N NaOH) from soils in four undisturbed sites [two evergreen oak forests, Quercus floribunda Lindl. (tilonj oak), Quercus leucotrichophora A Camus (banj oak), and two evergreen conifer forests, Cedrus deodara Loud. (deodar forest) and Pinus roxburghii Sarg. (chir pine forest)] and three disturbed sites. The sites were located between elevations of 1850 and 2360 m in the Central Himalaya. The seasonal pattern of soil respiration was similar in all the sites with a maximum during the rainy season, intermediate rates during the summer season and the lowest level of activity in winter. The rate of CO₂ efflux was higher in broadleaf than in conifer forests, and it was lowest in the disturbed sites. Among the edaphic conditions, soil moisture, N, organic C, pH, soil porosity, and root biomass positively affected total soil respiration. The proportion of root respiration to total soil respiration was higher in the disturbed sites than the undisturbed sites in winter. Conditions in the winter season were less favourable for microbial respiration than for root respiration.     

DDT and HCH Residues in Basmati Rice (Oryza sativa) Cultivated in Dehradun (India)

Organochlorine pesticides were used earlier for agricultureproduction. Their residues may still be present in soil and mayaccumulate in food crops, posing potential health problems to consumers. DDT, HCH, their isomers and metabolites were analyzedin samples of soil and rice plants collected from ten differentvillages of a well-known Basmati rice growing area in Dehradun.Residues of both pesticides were found in all samples ofsoil and different parts of rice plants except for a few grainsamples. Maximum residue was observed in husk and minimum ingrains. The average concentration of DDT in soil ranged from0.013 to 0.238 ppm. p,p′-DDE was the major metabolite (>63%). Theaverage concentration of DDT in rice grain varied from 0.002 to 0.040 ppm. o,p′-DDT was the main isomer (>93%). Theaverage concentration of HCH in soil ranged from 0.122 to 0.638 ppm. β-HCH was the predominant (43%) isomerfollowed by α-HCH (21%). The average HCH concentrationin rice grain ranged between 0.013 and 0.113 ppm. All four isomers were present in grains. The levels of DDT and CHCin grains were similar in magnitude as those from differentIndian states, but well below the maximum residue limit of 0.1 ppm for DDT and 0.05 ppm for HCH prescribed by the Government ofIndia and WHO/FAO. As such, the pesticide residue levels in thisexport commodity are not of hazardous nature.     

Helminthosporium leaf blight resistance and agronomic performance of wheat genotypes across warm regions of South Asia

Helminthosporium leaf blight (HLB) is the most important disease constraint to wheat (Triticum aestivum L.) cultivation in the eastern Gangetic Plains of South Asia. A Helminthosporium Monitoring Nursery (HMN) including potential adapted and exotic sources of HLB resistance was developed in Bangladesh, India and Nepal to assess the stability of genetic resistance across locations. The 8th, 9th and 10th HMN assessed the HLB resistance and agronomic traits of 17 wheat genotypes across 20 environments of Bangladesh, India and Nepal in the 1999‐2000, 2000‐2001 and 2001‐2002 cropping seasons, respectively. The area under the disease progress curve (AUDPC) for HLB, grain yield, thousand‐kernel weight (TKW), days to heading, days to maturity, and plant height were examined. The 17 genotypes showed a range of variability for disease and agronomic characters. Disease severity (AUDPC) differed in the 3 years and showed the highest values in 2002. The increase in AUDPC in 2002 caused the lowest grain yield, with an average 18% reduction due to HLB. A few genotypes (SW 89‐5422, Yangmai‐6 and Ning 8201) appeared to have stable HLB resistance across environments. However, most of the higher‐yielding genotypes, except BL 1883, were unstable. The results suggest that careful selection of HLB resistance with acceptable grain yield, TKW and plant height may be possible using the wheat genotypes included in the HMN.     

Cytogenetic analysis of interspecific hybrids in genus Citrullus (Cucurbitaceae)

Investigations on interspecific crossability in two species of the genus Citrullus were studied based on their morphology, chromosome pairing and pollen fertility in their hybrids resulting from 12 combinations(including reciprocals). These have been utilized for tracing the phylogenetic relationship between the taxa and factors responsible for their differentiation. A collective evaluation of data on cross compatibility,morphology, chromosome association and pollen fertility indicated a close phylogenetic relationship between the species C. colocynthis (wild2n = 22) and C. vulgaris (cultivated 2n = 22). Significant differences for crossability and pollen fertility were observed between hybrids of C. colocynthis × C. vulgaris and reciprocals. Meiotic analysis of F₁ hybrids revealed that these two species are freely crossable and provide normal chromosome association, involving an average of 9 to maximum 11 pairs of chromosomes. This indicated the possibility of high recombination and thereby genetic introgression of desirable traits. As both the species are of economic significance, breeding strategies can be developed for the genetic improvement of these species. This revised version was published online in August 2006 with corrections to the Cover Date.     

Inheritance of resistance to spot blotch caused by Bipolaris sorokiniana in spring wheat

Three F₁ progenies and their families in the segregating generations (F₃, F₄, F₅ and F₆), obtained after crossing resistant × susceptible wheat genotypes were studied in the field to determine the genetics of resistance to spot blotch caused by Bipolaris sorokiniana. Spot blotch scores in the F₁ generation showed absence of dominance. Individually threshed F₂ plants were used to advance the generations. Progenies (200‐250) of resistant genotypes Acc. No. 8226, Mon/Ald, Suzhoe#8 crossed with susceptible ‘Sonalika’ were evaluated in the F₃, F₄, F₅ and F₆ generations under induced epiphytotic conditions. Based on disease score distribution in individual progeny rows, F₃ progenies were grouped into four classes: homozygous resistant, homozygous susceptible, segregating resistant and segregating susceptible. Resistance appeared to be under the control of three additive genes. The presence of three genes was also noted in the distribution of F₄ and F₅ lines. In the case of F₆ progeny rows, both quantitative and qualitative models were used to estimate the number of segregating genes based on a 2‐year trial. It appeared that resistance to spot blotch was controlled by the additive interaction of more than two genes, possibly only three.